• ZIDAS main page

    Time: 23th - 28th June 2024

    Place: ETH, Zurich (in person)

    Participation fee: 600 CHF (academia) / 1800 CHF (industry)

  • Anyone can apply - irrespective of affiliation, position, or location!

     

    Application deadline: 2024-03-17

    Information about acceptance: 2024-04-01

    Registration has been closed.

  • About the School

    This one-week school provides a hands-on introduction to image processing and analysis, with an emphasis on biologically relevant examples.

    Is this school for you?

    • Are you a life-science researcher with a pressing need to quantify your light-microscopy images?
    • Are you uncertain about how to: Best calculate co-localisation, do deconvolution, automate the counting of cells, track objects over time, handle massive amounts of image data, record your image-analysis workflows in a reproducible manner?
    • If you answered yes to some of the above, then this school is for you!

    Motivation

    Digital images of high quality and quantity are now the norm in biomedical sciences. Ten to twenty years ago, when many current professors trained as students or post-docs, this was not yet the case as most microscopes were, at best, equipped with low-resolution digital cameras, celluloid-film (analogue) cameras, or no camera at all.

     

    This rapid change is rarely reflected in the curricula of life-science university departments and they offer few, if any, courses in image processing and analysis. Understandably, courses in image-analysis (computer-vision) in the computer-science departments tend to have different aims, work on different image-data, and pre-suppose literacy in at least one programming language, rendering them all but irrelevant for the life-scientist working in the laboratory.

     

    To bridge this gap, between what the life-scientist needs and what courses she/he is normally offered, we have created this school for image analysis. No former experience with programming is assumed, nor will much indeed be needed; only a strong desire to learn what can be done and how to do it is required.

    Structure of the week

    You will be working actively with image-analysis software every day -- this is an interactive hands-on school, not a passive lecture series. Short introductions are followed by guided workflows that we step through together. You can (and should) ask questions at any time throughout.

     

    There will be a single invited lecture every day, alternating between scientists using image-analysis as an integral part of their biomedical research and researchers developing new image-analysis algorithms and software.

     

    Also, we encourage you to bring your own data. During the training you will have a chance to explore various tools and concepts of image analysis and if they will be compatible, test them on your data, with support from the trainers.

    Financial support

    We are providing financial support to allow more people to apply despite financial constraints. We are going to provide: fee-waiver, travel support (up to 500CHF), and free accommodation for the period of training. Since we have only a limited number of scholarships, please apply for them only when your presence critically depends on receiving one.

    Factoids

    1. We will accept 25 participants --- this number is kept low to facilitate effective tutoring.
    2. You will need to bring your laptop and data.
    3. Participation is only possible for the entire week.
    4. The fee covers the attendance to the course and some snacks and drinks throughout the day. You need to cover travel, lunches & accommodation yourself.
    5. A small number of fee-waivers & travel grants & free accommodation are available.
    6. The workshop starts on Sunday, with some team building activities. We plan dinner on Wednesday (covered in the participation fee!) and some casual networking activities during the week.
    7. PhD students can earn two ECTS credits from the school (we provide documents, upon approval of your local doctoral school).
  • Venue

     

    Some information about the school's venue

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    Location

    The school will take place in ETH Zurich. The exact room is Alumni Pavillon (MM C 78.1). The place is here: Leonhardstrasse 34, 8092 Zürich.

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    Recommended hotels

    Hotel Saint Georges: there are still a few rooms with shared bathrooms at a price of about 95 CHF per night. Participants can contact them when booking with the keyword "ZIDAS"

     

    Guesthouse für dich: 100-170 CHF depending on the room. 

     

    Hotel Krone Unterstrass: 175 CHF for a single room with breakfast. Participants can contact them when booking with the keyword "ZIDAS/ETH"

  • Get pdf version

    Poster

    Please help us promote the event!

  • (Tentative) Program

    Expect some changes as we are working on the 2024 program right now...

  • Speakers & Trainers (alphabetical order)

    Many more to come! We are working on confirmation from Speakers and Trainers. With backgrounds in biology, computer science, and physics and extensive teaching experience across the disciplines

  • Connect With Us

    Something unclear? Let us know!

  • Support and Endorsements

    This school was created by ScopeM-IDA staff, co-organized with BIOP, University of Basel, and FMI for Biomedical Research staff, powered by SwissBIAS trainers, and supported by EXCITE and Imaging@EPFL.

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  • Sponsors

    A great thank you to our wonderful sponsors for supporting open bioimage data analysis.

    Nikon